Name: 104001164731-unkownib-ex-60-2253ariyaeskandari-orion-rawdata-9d5-2_s86 soft_filtered
Variants: 28782
Novel Variants: 556 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 179 |
CODON_CHANGE_PLUS_CODON_INSERTION | 109 |
CODON_DELETION | 80 |
CODON_INSERTION | 87 |
FRAME_SHIFT | 336 |
FRAME_SHIFT+SPLICE_SITE_REGION | 37 |
FRAME_SHIFT+START_LOST | 5 |
FRAME_SHIFT+STOP_GAINED | 5 |
FRAME_SHIFT+STOP_LOST | 4 |
MOTIF[MA0003.1:Ap2alpha] | 1 |
MOTIF[MA0024.1:E2F1] | 1 |
MOTIF[MA0062.2:Gabp] | 2 |
MOTIF[MA0079.2:SP1] | 1 |
MOTIF[MA0095.1:Yy1] | 2 |
MOTIF[MA0162.1:Egr1] | 2 |
NON_SYNONYMOUS_CODING | 11020 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 221 |
NON_SYNONYMOUS_START | 1 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 1 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 283 |
SPLICE_SITE_REGION | 8 |
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
SPLICE_SITE_REGION+CODON_INSERTION | 2 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 239 |
START_GAINED | 25 |
START_LOST | 12 |
START_LOST+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
STOP_GAINED | 107 |
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
STOP_GAINED+CODON_INSERTION | 1 |
STOP_GAINED+SPLICE_SITE_REGION | 1 |
STOP_LOST | 18 |
STOP_LOST+SPLICE_SITE_REGION | 5 |
SYNONYMOUS_CODING | 11583 |
SYNONYMOUS_STOP | 8 |
None | 0 |
Type | Total Variants |
---|---|
basic_indel_filter | 215 |
basic_snp_filter | 801 |
CNN_1D_INDEL_Tranche_99.40_100.00 | 6 |
CNN_1D_INDEL_Tranche_99.40_100.00;basic_indel_filter | 6 |
CNN_1D_SNP_Tranche_99.95_100.00 | 59 |
CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter | 40 |
PASS | 27655 |
Quality | Value |
---|---|
Min | 30.6 |
Average | 1181.72085539562 |
Max | 36706.6 |
Read Depth | Value |
---|---|
Min | 2 |
Average | 80.77882009589327 |
Max | 1013 |
Type | Total Variants |
---|---|
None | 0 |