Name: 104001164731-unkownib-ex-60-2253ariyaeskandari-orion-rawdata-9d5-2_s86 soft_filtered
Variants: 28782
Novel Variants: 556 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 28782 18753 0/1 9936 1/1 93 1/2
Total Gene-associated SNVs 28782 18753 0/1 9936 1/1 93 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION179
CODON_CHANGE_PLUS_CODON_INSERTION109
CODON_DELETION80
CODON_INSERTION87
FRAME_SHIFT336
FRAME_SHIFT+SPLICE_SITE_REGION37
FRAME_SHIFT+START_LOST5
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_LOST4
MOTIF[MA0003.1:Ap2alpha]1
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0062.2:Gabp]2
MOTIF[MA0079.2:SP1]1
MOTIF[MA0095.1:Yy1]2
MOTIF[MA0162.1:Egr1]2
NON_SYNONYMOUS_CODING11020
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION221
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS1
PROTEIN_STRUCTURAL_INTERACTION_LOCUS283
SPLICE_SITE_REGION8
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION1
SPLICE_SITE_REGION+CODON_INSERTION2
SPLICE_SITE_REGION+SYNONYMOUS_CODING239
START_GAINED25
START_LOST12
START_LOST+CODON_CHANGE_PLUS_CODON_DELETION1
STOP_GAINED107
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST18
STOP_LOST+SPLICE_SITE_REGION5
SYNONYMOUS_CODING11583
SYNONYMOUS_STOP8
None0

Type Total Variants
1175
MISSENSE11277
NONSENSE108
SILENT11830
None0

Type Total Variants
HIGH817
LOW11872
MODERATE11700
MODIFIER1
None0

Type Total Variants
basic_indel_filter215
basic_snp_filter801
CNN_1D_INDEL_Tranche_99.40_100.006
CNN_1D_INDEL_Tranche_99.40_100.00;basic_indel_filter6
CNN_1D_SNP_Tranche_99.95_100.0059
CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter40
PASS27655

Quality Value
Min30.6
Average1181.72085539562
Max36706.6

Read Depth Value
Min2
Average80.77882009589327
Max1013

Type Total Variants
None0

Chromossome Total Variants
12777
101205
112153
121385
13528
14893
15930
161087
171813
18469
192358
21879
20612
21372
22641
31720
41050
51163
61821
71455
8912
91071
X478
Y10