Name: wes08-paw final
Variants: 94433
Novel Variants: 92193 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
486 | |
CODON_CHANGE_PLUS_CODON_DELETION | 15 |
CODON_CHANGE_PLUS_CODON_INSERTION | 12 |
CODON_DELETION | 9 |
CODON_INSERTION | 10 |
FRAME_SHIFT | 225 |
FRAME_SHIFT+SPLICE_SITE_REGION | 8 |
FRAME_SHIFT+STOP_GAINED | 5 |
FRAME_SHIFT+STOP_LOST | 1 |
MOTIF_DELETED | 1 |
MOTIF[MA0003.1:Ap2alpha] | 10 |
MOTIF[MA0016.1:RXRA] | 1 |
MOTIF[MA0024.1:E2F1] | 1 |
MOTIF[MA0036.1:Gata2] | 1 |
MOTIF[MA0047.2:FOXA2] | 1 |
MOTIF[MA0058.1:Max] | 16 |
MOTIF[MA0059.1:Cmyc] | 3 |
MOTIF[MA0062.2:Gabp] | 9 |
MOTIF[MA0065.1:PPARG] | 1 |
MOTIF[MA0079.1:SP1] | 1 |
MOTIF[MA0079.2:SP1] | 4 |
MOTIF[MA0080.2:PU1] | 2 |
MOTIF[MA0093.1:USF1] | 8 |
MOTIF[MA0095.1:Yy1] | 3 |
MOTIF[MA0099.2:AP1] | 2 |
MOTIF[MA0114.1:HNF4A] | 12 |
MOTIF[MA0138.2:Nrsf] | 7 |
MOTIF[MA0139.1:CTCF] | 47 |
MOTIF[MA0140.1:Tal1] | 1 |
MOTIF[MA0147.1:Cmyc] | 10 |
MOTIF[MA0148.1:FOXA1] | 1 |
MOTIF[MA0154.1:EBF] | 4 |
MOTIF[MA0159.1:RXR] | 2 |
MOTIF[MA0162.1:Egr1] | 6 |
NON_SYNONYMOUS_CODING | 1549 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 40 |
NON_SYNONYMOUS_START | 1 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 1 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 44 |
SPLICE_SITE_REGION | 11 |
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
SPLICE_SITE_REGION+CODON_DELETION | 1 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 27 |
START_GAINED | 28 |
START_LOST | 4 |
STOP_GAINED | 66 |
STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
STOP_GAINED+SPLICE_SITE_REGION | 7 |
STOP_LOST | 7 |
SYNONYMOUS_CODING | 1304 |
SYNONYMOUS_START | 2 |
SYNONYMOUS_STOP | 2 |
None | 0 |
Quality | Value |
---|---|
Min | 10.15 |
Average | 708.121685321611 |
Max | 22024.8 |
Read Depth | Value |
---|---|
Min | 1 |
Average | 37.873254053138204 |
Max | 1271 |
Type | Total Variants |
---|---|
None | 0 |