Name: wes08-paw final
Variants: 94433
Novel Variants: 92193 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 94433 56236 0/1 246 1/0 37951 1/1
Total Gene-associated SNVs 94433 56236 0/1 246 1/0 37951 1/1

Type Total Variants
486
CODON_CHANGE_PLUS_CODON_DELETION15
CODON_CHANGE_PLUS_CODON_INSERTION12
CODON_DELETION9
CODON_INSERTION10
FRAME_SHIFT225
FRAME_SHIFT+SPLICE_SITE_REGION8
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_LOST1
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]10
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]16
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.2:Gabp]9
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]4
MOTIF[MA0080.2:PU1]2
MOTIF[MA0093.1:USF1]8
MOTIF[MA0095.1:Yy1]3
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]12
MOTIF[MA0138.2:Nrsf]7
MOTIF[MA0139.1:CTCF]47
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]10
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]4
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]6
NON_SYNONYMOUS_CODING1549
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION40
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS1
PROTEIN_STRUCTURAL_INTERACTION_LOCUS44
SPLICE_SITE_REGION11
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION1
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING27
START_GAINED28
START_LOST4
STOP_GAINED66
STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION1
STOP_GAINED+SPLICE_SITE_REGION7
STOP_LOST7
SYNONYMOUS_CODING1304
SYNONYMOUS_START2
SYNONYMOUS_STOP2
None0

Type Total Variants
1681
MISSENSE1601
NONSENSE73
SILENT666
None0

Type Total Variants
HIGH369
LOW1433
MODERATE1637
MODIFIER582
None0

Type Total Variants
MG_INDEL_Filter444
MG_SNP_Filter4207
PASS89782

Quality Value
Min10.15
Average708.121685321611
Max22024.8

Read Depth Value
Min1
Average37.873254053138204
Max1271

Type Total Variants
None0

Chromossome Total Variants
19346
103951
115405
125127
131984
143372
153219
164295
175151
181533
196723
26387
202200
211303
222389
34880
43779
53834
65871
75416
82944
93731
X1565
Y28