Name: p38bis-full_variant_table
Variants: 24918
Novel Variants: 1004 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| CODON_CHANGE_PLUS_CODON_DELETION | 76 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 37 |
| CODON_DELETION | 31 |
| CODON_INSERTION | 20 |
| FRAME_SHIFT | 35 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 8 |
| FRAME_SHIFT+STOP_GAINED | 1 |
| FRAME_SHIFT+STOP_LOST | 1 |
| GENE_FUSION | 2 |
| MOTIF[MA0003.1:Ap2alpha] | 3 |
| MOTIF[MA0014.1:Pax5] | 3 |
| MOTIF[MA0024.1:E2F1] | 1 |
| MOTIF[MA0058.1:Max] | 13 |
| MOTIF[MA0059.1:Cmyc] | 1 |
| MOTIF[MA0062.2:Gabp] | 3 |
| MOTIF[MA0079.1:SP1] | 2 |
| MOTIF[MA0079.2:SP1] | 3 |
| MOTIF[MA0095.1:Yy1] | 1 |
| MOTIF[MA0099.1:Cfos] | 1 |
| MOTIF[MA0099.2:AP1] | 1 |
| MOTIF[MA0114.1:HNF4A] | 3 |
| MOTIF[MA0138.2:Nrsf] | 1 |
| MOTIF[MA0139.1:CTCF] | 15 |
| MOTIF[MA0148.1:FOXA1] | 1 |
| MOTIF[MA0162.1:Egr1] | 10 |
| NON_SYNONYMOUS_CODING | 2376 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 62 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 3 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 119 |
| SPLICE_SITE_REGION | 5 |
| SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 68 |
| START_GAINED | 59 |
| START_LOST | 3 |
| STOP_GAINED | 20 |
| STOP_LOST | 5 |
| SYNONYMOUS_CODING | 3159 |
| SYNONYMOUS_STOP | 2 |
| TRANSCRIPT | 1 |
| None | 0 |
| Type | Total Variants |
|---|---|
| homopolymer_region | 9 |
| homopolymer_region;off_target | 41 |
| low_coverage | 135 |
| low_coverage;low_variant_fraction;off_target | 3 |
| low_coverage;off_target | 4681 |
| low_variant_fraction | 313 |
| low_variant_fraction;off_target | 134 |
| off_target | 13411 |
| PASS | 6191 |
| Quality | Value |
|---|---|
| Min | 101.0 |
| Average | 905.557669154828 |
| Max | 10000.0 |
| Read Depth | Value |
|---|---|
| Min | 6 |
| Average | 55.74877598523156 |
| Max | 1000 |
| Type | Total Variants |
|---|---|
| None | 0 |