Name: 20191018_null_jozsefpocsai_1_vcf
Variants: 59322
Novel Variants: 447 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| CODON_CHANGE_PLUS_CODON_DELETION | 92 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 62 |
| CODON_DELETION | 39 |
| CODON_INSERTION | 69 |
| FRAME_SHIFT | 256 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 38 |
| FRAME_SHIFT+START_LOST | 2 |
| FRAME_SHIFT+STOP_GAINED | 5 |
| FRAME_SHIFT+STOP_LOST | 5 |
| MOTIF_DELETED | 4 |
| MOTIF[MA0003.1:Ap2alpha] | 7 |
| MOTIF[MA0014.1:Pax5] | 2 |
| MOTIF[MA0024.1:E2F1] | 2 |
| MOTIF[MA0035.2:Gata1] | 1 |
| MOTIF[MA0058.1:Max] | 6 |
| MOTIF[MA0062.1:Gabp] | 1 |
| MOTIF[MA0062.2:Gabp] | 13 |
| MOTIF[MA0079.1:SP1] | 1 |
| MOTIF[MA0079.2:SP1] | 4 |
| MOTIF[MA0080.2:PU1] | 1 |
| MOTIF[MA0083.1:Srf] | 1 |
| MOTIF[MA0095.1:Yy1] | 5 |
| MOTIF[MA0114.1:HNF4A] | 1 |
| MOTIF[MA0138.2:Nrsf] | 3 |
| MOTIF[MA0139.1:CTCF] | 36 |
| MOTIF[MA0147.1:Cmyc] | 3 |
| MOTIF[MA0148.1:FOXA1] | 1 |
| MOTIF[MA0162.1:Egr1] | 5 |
| NON_SYNONYMOUS_CODING | 10300 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 193 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 4 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 240 |
| SPLICE_SITE_REGION | 26 |
| SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
| SPLICE_SITE_REGION+CODON_DELETION | 2 |
| SPLICE_SITE_REGION+CODON_INSERTION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 205 |
| START_GAINED | 137 |
| START_LOST | 16 |
| START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
| STOP_GAINED | 87 |
| STOP_GAINED+SPLICE_SITE_REGION | 2 |
| STOP_LOST | 24 |
| STOP_LOST+SPLICE_SITE_REGION | 1 |
| SYNONYMOUS_CODING | 10645 |
| SYNONYMOUS_STOP | 13 |
| TRANSCRIPT | 2 |
| None | 0 |
| Type | Total Variants |
|---|---|
| PASS | 59322 |
| Quality | Value |
|---|---|
| Min | 30.15 |
| Average | 2069.65521627734 |
| Max | 20424.2 |
| Read Depth | Value |
|---|---|
| Min | 0 |
| Average | 64.41293280739018 |
| Max | 536 |
| Type | Total Variants |
|---|---|
| None | 0 |