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SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
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EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
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Genes at Omim

B4GALT1, CAT, CYP21A2, EPHA2, MLYCD, MVD, NCR3, PHYH, TBC1D20, TFRC, TICAM1, VCP, YARS,
B4GALT1 Congenital disorder of glycosylation, type IId, 607091 (3)
CAT Acatalasemia, 614097 (3)
CYP21A2 Adrenal hyperplasia, congenital, due to 21-hydroxylase deficiency, 201910 (3)
Hyperandrogenism, nonclassic type, due to 21-hydroxylase deficiency, 201910 (3)
EPHA2 Cataract 6, multiple types, 116600 (3)
MLYCD Malonyl-CoA decarboxylase deficiency, 248360 (3)
MVD Porokeratosis 7, multiple types, 614714 (3)
NCR3 {Malaria, mild, susceptibility to}, 609148 (3)
PHYH Refsum disease, 266500 (3)
TBC1D20 Warburg micro syndrome 4, 615663 (3)
TFRC Immunodeficiency 46, 616740 (3)
TICAM1 {Encephalopathy, acute, infection-induced (herpes-specific), susceptibility to, 6}, 614850 (3)
VCP Amyotrophic lateral sclerosis 14, with or without frontotemporal dementia, 613954 (3)
Charcot-Marie-Tooth disease, type 2Y, 616687 (3)
Inclusion body myopathy with early-onset Paget disease and frontotemporal dementia 1, 167320 (3)
YARS Charcot-Marie-Tooth disease, dominant intermediate C, 608323 (3)

Genes at Clinical Genomics Database

B4GALT1, CAT, CYP21A2, EPHA2, MLYCD, MVD, PHYH, TBC1D20, TFRC, TICAM1, VCP, YARS,
B4GALT1 Congenital disorder of glycosylation, type IId
CAT Acatalasemia
CYP21A2 Adrenal hyperplasia, congenital, due to 21-hydroxylase deficiency
Hyperandrogenism, nonclassic type, due to 21-hydroxylase deficiency
EPHA2 Cataract 6, multiple types
MLYCD Malonyl-CoA decarboxylase deficiency
MVD Porokeratosis 7
PHYH Refsum disease
TBC1D20 Warburg micro syndrome 4
TFRC Immunodeficiency 46
TICAM1 Herpes simplex encephalitis, susceptibility to, 4
VCP Amyotrophic lateral sclerosis 14, with or without frontotemporal dementia
Charcot-Marie-Tooth disease type, axonal type, 2Y
Inclusion body myopathy with early-onset Paget disease with or without frontotemporal dementia 1
YARS Charcot-Marie-Tooth disease, dominant intermediate C

Genes at HGMD

Summary

Number of Variants: 44
Number of Genes: 37

Export to: CSV
  • Page 1 of 1

ACAP1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 17 . 7247233 692.77 A G PASS 0/1 74 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None ACAP1|0.086299912|53.89%

ACSM2A

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 16 . 20480994 1681.77 C T PASS 1/1 36 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None ACSM2A|0.005190474|85.6%
View wes08-paw final 16 . 20480982 2138.77 A T PASS 1/1 48 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None ACSM2A|0.005190474|85.6%

ALKBH2

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 12 . 109526297 334.77 C T PASS 0/1 35 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None ALKBH2|0.007056546|83.44%

ALOX15B

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 17 . 7945769 978.77 C G PASS 1/1 30 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH 0.52 0.00 None None None None None None ALOX15B|0.008183706|82.49%

ASB11

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final X . 15315720 195.84 T A PASS 1/1 6 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH 0.22 1.00 None None None None None None ASB11|0.151540693|42.75%

B4GALT1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 9 . 33135240 479.77 G A PASS 0/1 33 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH 0.00 1.00 None None None None None None B4GALT1|0.06435347|58.79%

CAT

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 11 . 34470896 670.77 C A PASS 1/1 22 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None CAT|0.949304275|2.27%

CLIC1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 6 . 31702005 207.77 G A PASS 0/1 16 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None CLIC1|0.6252556|10.94%

CNOT1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 16 . 58555208 367.77 G A PASS 0/1 19 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH 0.00 1.00 None None None None None None CNOT1|0.849359651|4.66%

CYP21A2

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 6 . 32006551 207.77 G A MG_SNP_Filter 0/1 14 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None CYP21A2|0.039907204|65.79%

DUSP3

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 17 . 41847169 257.77 C T PASS 0/1 16 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None DUSP3|0.128877516|46.05%

ENDOV

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 17 rs775271641
dbSNP Clinvar
78399340 682.77 G A PASS 0/1 37 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH 0.00 1.00 None None None None None None ENDOV|0.017164071|75.74%

EPHA2

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 1 . 16451770 94.77 G T PASS 0/1 9 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None EPHA2|0.768915771|6.62%

EYA2

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 20 rs761096505
dbSNP Clinvar
45725733 183.77 G A PASS 0/1 20 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH 0.00 0.96 None None None None None None EYA2|0.640546711|10.43%

FOLH1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 11 . 49175864 330.77 A G PASS 0/1 22 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None FOLH1|0.065976588|58.36%

HCN2

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 19 rs1054786
dbSNP Clinvar
613898 3996.77 T C PASS 1/1 135 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH 0.82169 0.82170 0.30923 None None None None None None HCN2|0.016086187|76.44%

HMGCS1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 5 . 43298211 289.41 T G PASS 0/1 11 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None HMGCS1|0.437033693|18.84%

HSD17B8

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 6 . 33173476 268.77 T G PASS 0/1 33 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None HSD17B8|0.095490496|52.02%

METAP2

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 12 . 95906577 144.03 G C PASS 1/1 4 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH 0.00 0.99 None None None None None None METAP2|0.903697464|3.37%

MLYCD

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 16 . 83948855 909.77 A G PASS 1/1 26 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None MLYCD|0.040655509|65.55%

MVD

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 16 . 88722526 739.77 A G PASS 1/1 20 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH 0.49 0.21 None None None None None None MVD|0.030828097|69.02%

NCR3

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 6 . 31557671 486.77 C T PASS 0/1 36 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None NCR3|0.162756468|41.19%

PHYH

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 10 rs367762012
dbSNP Clinvar
13336445 1410.77 A G PASS 1/1 44 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH 0.00008 0.00 1.00 None None None None None None PHYH|0.021009347|73.67%

PTPN23

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 3 . 47422632 42.77 A G PASS 0/1 7 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None PTPN23|0.042746364|64.87%

RAB1A

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 2 . 65331893 475.77 A G PASS 1/1 17 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH 0.00 1.00 None None None None None None RAB1A|0.906392493|3.32%

SERPINB1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 6 . 2834031 664.77 C T PASS 1/1 23 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None SERPINB1|0.214322052|35.07%

SULT1A2

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 16 . 28606747 1032.77 G A PASS 0/1 48 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None SULT1A2|0.020328499|74.01%
View wes08-paw final 16 . 28606744 994.77 A T PASS 0/1 47 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None SULT1A2|0.020328499|74.01%
View wes08-paw final 16 rs775873329
dbSNP Clinvar
28607125 796.77 T C PASS 0/1 51 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH 0.11 0.03 None None None None None None SULT1A2|0.020328499|74.01%

TARS

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 5 . 33458728 149.77 T C PASS 0/1 13 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None TARS|0.510897589|15.33%

TBC1D20

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 20 . 419860 29.74 AG... A PASS 0/1 7 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None TBC1D20|0.217946046|34.62%

TFRC

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 3 . 195791241 3517.73 T TG... PASS 1/1 69 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None TFRC|0.701274957|8.47%
View wes08-paw final 3 . 195789759 2457.77 G T PASS 1/1 80 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None TFRC|0.701274957|8.47%
View wes08-paw final 3 . 195779036 754.73 TG... T PASS 0/1 103 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None TFRC|0.701274957|8.47%
View wes08-paw final 3 . 195778940 2096.73 TG... T PASS 0/1 156 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None TFRC|0.701274957|8.47%

TICAM1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 19 . 4818366 930.77 T C PASS 1/1 29 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None TICAM1|0.001006178|95.39%

TNFSF14

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 19 . 6665009 3217.77 T C PASS 1/1 91 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None TNFSF14|0.025473309|71.58%

TOM1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 22 . 35718007 124.77 C T PASS 0/1 9 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH 0.00 0.61 None None None None None None TOM1|0.117632845|47.82%
View wes08-paw final 22 . 35718000 154.77 C T PASS 0/1 11 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None TOM1|0.117632845|47.82%

VCP

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 9 . 35062975 243.77 C T PASS 0/1 28 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH 0.00 1.00 None None None None None None VCP|0.893080702|3.59%

WDR5

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 9 . 137007762 397.77 A G PASS 1/1 13 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH 0.00 1.00 None None None None None None WDR5|0.18423131|38.43%

WHSC1L1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 8 . 38146269 1844.77 T C PASS 1/1 54 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH None None None None None None WHSC1L1|0.701625331|8.45%

YARS

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View wes08-paw final 1 . 33276294 554.77 G A PASS 0/1 30 PROTEIN_STRUCTURAL_INTERACTION_LOCUS HIGH 0.00 1.00 None None None None None None YARS|0.727770087|7.73%
  • Page 1 of 1